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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life, , , , , , , , , and 11 other author(s). Nature Biotechnology, (Jun 12, 2017)opm: an R package for analysing OmniLog® phenotype microarray data., , , , , , and . Bioinform., 29 (14): 1823-1824 (2013)Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences., , , and . BMC Bioinform., (2006)Highly parallelized inference of large genome-based phylogenies., , , and . Concurr. Comput. Pract. Exp., 26 (10): 1715-1729 (2014)COPYCAT : cophylogenetic analysis tool., , , and . Bioinform., 23 (7): 898-900 (2007)Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats, , , , , , , , , and . ISME J, 11 (6): 1483--1499 (June 2017)Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets., , , , , , and . PLoS Comput. Biol., (2016)AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa., , , and . BMC Bioinform., (2007)Controlling false discoveries in high-dimensional situations: boosting with stability selection., , and . BMC Bioinform., (2015)Genome sequence-based species delimitation with confidence intervals and improved distance functions., , , and . BMC Bioinform., (2013)