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The Significance of thermodynamic models in the accuracy improvement of RNA secondary structure prediction using permutation based simulated annealing

, and . Proceedings of the IEEE Congress on Evolutionary Computatio, page 3879--3885. (2007)

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EvoNN: a customizable evolutionary neural network with heterogenous activation functions., and . GECCO (Companion), page 1449-1456. ACM, (2018)The impact of pseudorandom number quality on P-RnaPredict, a parallel genetic algorithm for RNA secondary structure prediction., , , and . GECCO, page 479-480. ACM, (2005)Integrating Thermodynamic and Observed-Frequency Data for Non-coding RNA Gene Search., and . Trans. Computational Systems Biology, (2008)Improving the Portability and Performance of jViz.RNA - A Dynamic RNA Visualization Software., , and . PRIB, volume 7632 of Lecture Notes in Computer Science, page 82-93. Springer, (2012)SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure Prediction, and . Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, page 466--475. (2006)SigTools: exploratory visualization for genomic signals., , and . Bioinform., 38 (4): 1126-1128 (2022)RNA Structure as Permutation: A GA Approach Comparing Different Genetic Sequencing Operators., and . ISMIS, volume 2871 of Lecture Notes in Computer Science, page 511-520. Springer, (2003)Considering Stem-Loops as Sequence Signals for Finding Ribosomal RNA Genes., and . Computational Intelligence in Biomedicine and Bioinformatics, volume 151 of Studies in Computational Intelligence, Springer, (2008)Non-coding RNA gene finding with combined partial covariance models., and . CIBCB, page 306-313. IEEE, (2012)Expanded study of efn2 thermodynamic model performance on RnaPredict, an evolutionary algorithm for RNA folding., and . CIBCB, page 1-8. IEEE, (2010)