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NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.

, , , , and . BMC Bioinform., (2015)

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Large-scale reconstruction and phylogenetic analysis of metabolic environments, , , and . Proceedings of the National Academy of Sciences, 105 (38): 14482--14487 (Sep 23, 2008)Evolutionary dynamics of adaptive populations: the effect of phenotypic plasticity, imitation and culture on evolution. Tel Aviv University, Israel, (2006)Tel Aviv University Library.Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease, , and . Proceedings of the National Academy of Sciences, 109 (2): 594--599 (Jan 10, 2012)Conservation of trans-acting circuitry during mammalian regulatory evolution, , , , , , , , , and 19 other author(s). Nature, 515 (7527): 365--370 (November 2014)Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species., , , , , and . PLoS Comput. Biol., (2010)MetaLAFFA: a flexible, end-to-end, distributed computing-compatible metagenomic functional annotation pipeline., , and . BMC Bioinform., 21 (1): 471 (2020)NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species., , , and . Bioinform., 28 (19): 2560 (2012)NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment., and . Bioinform., 28 (5): 734-735 (2012)Computational systems biology and in silico modeling of the human microbiome.. Briefings Bioinform., 13 (6): 769-780 (2012)Emergent Biosynthetic Capacity in Simple Microbial Communities., , and . PLoS Comput. Biol., (2014)