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Challenges in microbial ecology: building predictive understanding of community function and dynamics., , , , , , , , , and 21 other author(s). The ISME journal, (Mar 29, 2016)Stratification of co-evolving genomic groups using ranked phylogenetic profiles., , , , , and . BMC Bioinform., (2009)Competitive and cooperative metabolic interactions in bacterial communities, , , , , , , , and . Nature Communications, (Dec 13, 2011)Toward the Educated Design of Bacterial Communities, and . Beneficial Microorganisms in Multicellular Life Forms, Springer Berlin Heidelberg, (2011)NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation., , , , and . BMC Bioinform., (2015)NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species., , , and . Bioinform., 28 (19): 2560 (2012)Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data., , , , , , , , and . PLoS Comput. Biol., (2007)Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species., , , , , and . PLoS Comput. Biol., (2010)Metabolic innovations towards the human lineage, , , and . BMC Evolutionary Biology, 8 (1): 247+ (Sep 9, 2008)Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms, , , , , , , , and . PLoS One, (2014)