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Comparisons of Distance Methods for Combining Covariates and Abundances in Microbiome Studies., , , , and . Pacific Symposium on Biocomputing, page 213-224. World Scientific Publishing, (2012)SmashCell: a software framework for the analysis of single-cell amplified genome sequences., , , , and . Bioinform., 26 (23): 2979-2980 (2010)Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment., , , , , , and . PLoS Comput. Biol., (2017)An ecological and evolutionary perspective on human--microbe mutualism and disease, , and . Nature, 449 (7164): 811 (2007)Early prediction and longitudinal modeling of preeclampsia from multiomics., , , , , , , , , and 23 other author(s). Patterns, 3 (12): 100655 (2022)Microbiota-Targeted Therapies: An Ecological Perspective, , , and . Science Translational Medicine, 4 (137): 137rv5 (Jun 6, 2012)Metagenomic Analysis of the Human Distal Gut Microbiome, , , , , , , , , and . Science, 312 (5778): 1355--1359 (2006)Reproducible Research Workflow in R for the Analysis of Personalized Human Microbiome Data., , , , and . PSB, page 183-194. (2016)Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy., , , , , , , , , and 33 other author(s). Bioinform., 35 (1): 95-103 (2019)The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing, , , and . PLoS Biol, 6 (11): e280+ (Nov 18, 2008)