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A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.

, , , and . Briefings Bioinform., 9 (5): 404-421 (2008)

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Specifying Concurrent Systems Using Logic.. FORTE, page 245-260. North-Holland, (1989)Protein structure comparison based o n profiles of topological motifs: a feasible way to deal with information from negative examples., , and . German Conference on Bioinformatics, page 159-165. (2003)ISMB/ECCB 2004 Organization., , and . ISMB/ECCB (Supplement of Bioinformatics), page 3-5. (2004)Tutoriel I: Bioinformatique et contraintes.. JFPLC, page 13-. Hermes, (2000)Specification and Implementation of Concurrent Systems using PARLOG.. Specification and Verification of Concurrent Systems, page 455-473. Springer, (1988)Target driven biochemical network reconstruction based on petri nets and simulated annealing., , and . CMSB, page 33-42. ACM, (2010)Biomodel Engineering - From Structure to Behavior., , , and . Trans. Computational Systems Biology, (2010)A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets., , and . CMSB, volume 4695 of Lecture Notes in Computer Science, page 200-216. Springer, (2007)A Model for Interaction of Agents and Environments., and . WADT, volume 1827 of Lecture Notes in Computer Science, page 311-328. Springer, (1999)Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments., , , and . Trans. Computational Systems Biology, (2009)